PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760926
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 271aa    MW: 30470.1 Da    PI: 4.9032
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760926genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-072362538
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                C+ +e+ +++  C  ++  lC++C +e+H        H+
  676760926 23 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 62
               7*****************************6566676765 PP

2zf-B_box23.21.5e-0774112435
   zf-B_box   4 rkCpeHe.......ekelqlfCedCqqllCedClleeHk 35 
                ++C+ ++       ek + +fC +++ llC+dC +++H 
  676760926  74 PRCDICQileqpqkEKAAFIFCVEDRALLCRDCDESIHV 112
                78999999999987677999******************4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.0581966IPR000315B-box-type zinc finger
SMARTSM003361.6E-91966IPR000315B-box-type zinc finger
CDDcd000217.35E-62264No hitNo description
PfamPF006433.3E-52363IPR000315B-box-type zinc finger
SMARTSM003363.5E-1271125IPR000315B-box-type zinc finger
CDDcd000212.09E-674124No hitNo description
PROSITE profilePS501198.50374125IPR000315B-box-type zinc finger
PfamPF006431.9E-574121IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTKGERRATE EEWDPRDLAM KIQCDVCENA PATVICCADE AALCPKCDVE IHAANKLASK  60
HQRLHLNSLS TKFPRCDICQ ILEQPQKEKA AFIFCVEDRA LLCRDCDESI HVANTRSANH  120
QRFLATGIKV ALSSSSCSKE TEKNQSEPSN NQQKAKEIPA KTPSQQPPSS AAPLPWAVDD  180
FFHFSDPEFT DKQKGQLDLG ELDWFSDMGF FSDQINQETL PAAEVPELSV SHLGHVHSYR  240
PMKSNVSYKK PRLEIRDDDD DEEHFIVPDL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3869730.0JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302468.11e-160B-box zinc finger protein 24
SwissprotQ962881e-150BBX24_ARATH; B-box zinc finger protein 24
TrEMBLG9HRU71e-160G9HRU7_BRANA; BnaC08g01640D protein
STRINGBra030635.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-139DBB family protein